Added experimental support for Mouse Methylation BeadChip (feedback welcome)
Added on_disk option to read_idats(). Uses ff package to store methylation data on disk instead memory. While slower, should enable analyses of large datasets on small machines.
Update vignette
ewastools 1.8.0
Removed deconvolution models based on combinations of two datasets
Improved support for EPICv2 chip, adding a function to handle new probe IDs
Refactored parsing of manifests files
ewastools 1.7.2
Added support for EPICv2 chip
ewastools 1.7.1
Added HRS cell composition model
ewastools 1.7
Saliva cell composition prediction
Test detectionP.minfi for compatibility
Drop normalize
ewastools 1.6
read_idats: extract Sentrix barcode and position from .idat files, stored in meta data.table (92eb8df289a473fa0c06471be197db1953e39efd0)
call_genotypes: use pre-specified parameters for SNP mixture model by default, i.e., learn=FALSE (507abceeb8db572d72089e423678f3cd5a7f6769)
Update recommedation of pre-processing workflow: call mask() after check_sex() (eb54d1b0d74d2b0231db6e03a8c60710abd42e09)
Add some unit tests
Fix: some bisulfite conversion control probes were ignored due to inconsistent naming (24233ffcbea4337b9a7d4d3060b03b484d5ba01c)