Package index • ewastools

All functions

methylation_score(): Various methylation scores
correct_dye_bias() correct_dye_bias2() beta_values(): Functions for preprocessing
call_genotypes() mxm_() snp_outliers() eBeta(): Genotype calling
estimateLC(): Cell composition
check_sex() predict_sex(): Infer the sex of sample donor
check_snp_agreement() agreement_() enumerate_sample_donors(): Agreement of SNPs
control_metrics() sample_failure(): Quality control metrics
detectionP() detectionP.neg() mask() eval_detP_cutoffs() detectionP.minfi(): Detection p-values
drop_samples(): Drop samples
read_idats(): Read .idat files
summits(): Return peaks of beta-value distribution