Quality control metrics

Calculate the QC metrics as described in the 'BeadArray Controls Reporter Software Guide' from Illumina.

control_metrics(raw)

sample_failure(metrics)

Arguments

raw

Output of calling read_idats

metrics

Output of callling control_metrics

Value

For control_metrics, a list of 17 control metrics, each one a numeric vector equal in length to the sample size

For sample_failure, a logical vector, TRUE if sample at corresponding index failed on any of the 17 control metrics.

Note

You can download the Software Guide at https://support.illumina.com/downloads/beadarray-controls-reporter-software-guide-1000000004009.html